3DCA Structural Genomics, Unknown Function date Jun 03, 2008
title Crystal Structure Of The Rpa0582- Protein Of Unknown Functio Rhodopseudomonas Palustris- A Structural Genomics Target
authors P.Sledz, S.Wang, M.Chruszcz, V.Yim, M.Kudritska, E.Evdokimova, D.T A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center F Structural Genomics (Mcsg)
compound source
Molecule: Rpa0582
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Gene: Rpa0582
Expression_system: Escherichia Coli
Expression_system_strain: Bl21-Codonplus(De3)-Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv Lic
symmetry Space Group: H 3
R_factor 0.273 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
193.495 193.495 118.848 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.35 Å
ligand MSE, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3dca.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3dca.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3DCA
  • CSU: Contacts of Structural Units for 3DCA
  • Likely Quarternary Molecular Structure file(s) for 3DCA
  • Structure Factors (382 Kb)
  • Retrieve 3DCA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DCA from S2C, [Save to disk]
  • Re-refined 3dca structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DCA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DCA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DCA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dca_C] [3dca_A] [3dca_D] [3dca_B] [3dca]
  • SWISS-PROT database: [Q6NC90]
  • Domain organization of [Q6NC90_RHOPA] by SWISSPFAM
    • Other resources with information on 3DCA
  • Community annotation for 3DCA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science