3DCY Apoptosis Regulator date Jun 04, 2008
title Crystal Structure A Tp53-Induced Glycolysis And Apoptosis Re Protein From Homo Sapiens.
authors J.G.Mccoy, C.A.Bingman, G.E.Wesenberg, G.N.Phillips Jr., Center Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Regulator Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C12orf5
Expression_system: Escherichia Coli
Expression_system_strain: B834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp 16
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.229
length a length b length c angle alpha angle beta angle gamma
40.983 76.408 79.536 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand MSE, PO4 enzyme
  • bisphosphoglycerate 2-phosph...
  • fructose-2,6-bisphosphate 2-...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3dcy.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3DCY
  • CSU: Contacts of Structural Units for 3DCY
  • Likely Quarternary Molecular Structure file(s) for 3DCY
  • Structure Factors (611 Kb)
  • Retrieve 3DCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DCY from S2C, [Save to disk]
  • Re-refined 3dcy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DCY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DCY, from MSDmotif at EBI
  • Fold representative 3dcy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dcy_A] [3dcy]
  • SWISS-PROT database: [Q9NQ88]
  • Domain organization of [TIGAR_HUMAN] by SWISSPFAM
  • Domain found in 3DCY: [PGAM ] by SMART
  • Other resources with information on 3DCY
  • Community annotation for 3DCY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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