OCA Atlas for 3DEL

3DEL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene

Gene
Ontology

Chain	Function	Process	Component
B, D, C, F

Primary reference

Exploiting antigenic diversity for vaccine design: the Chlamydia ArtJ paradigm., Soriani M, Petit P, Grifantini R, Petracca R, Gancitano G, Frigimelica E, Nardelli F, Garcia C, Spinelli S, Scarabelli G, Fiorucci S, Affentranger R, Ferrer-Navarro M, Zacharias M, Colombo G, Vuillard L, Daura X, Grandi G, J Biol Chem. 2010 Jun 30. PMID:20592031

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]

Biological Unit Coordinates (3del.pdb1.gz) 42 Kb

Biological Unit Coordinates (3del.pdb2.gz) 42 Kb

Biological Unit Coordinates (3del.pdb3.gz) 42 Kb

Biological Unit Coordinates (3del.pdb4.gz) 42 Kb

CSU: Contacts of Structural Units for 3DEL

Likely Quarternary Molecular Structure file(s) for 3DEL

Structure Factors (6513 Kb)

Retrieve 3DEL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DEL from S2C, [Save to disk]

Re-refined 3del structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DEL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3del] [3del_B] [3del_C] [3del_D] [3del_F]

SWISS-PROT database: [O84385]

Domain found in 3DEL: [PBPb ] by SMART

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