3DER		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ALA, LYS, MG	enzyme
Gene	TM
Gene Ontology	Chain Function Process Component B, C, A, D
Primary reference	Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening., Kalyanaraman C, Imker HJ, Fedorov AA, Fedorov EV, Glasner ME, Babbitt PC, Almo SC, Gerlt JA, Jacobson MP, Structure. 2008 Nov;16(11):1668-77. PMID:19000819

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk] Biological Unit Coordinates (3der.pdb1.gz) 114 Kb Biological Unit Coordinates (3der.pdb2.gz) 115 Kb Biological Unit Coordinates (3der.pdb3.gz) 449 Kb LPC: Ligand-Protein Contacts for 3DER CSU: Contacts of Structural Units for 3DER Likely Quarternary Molecular Structure file(s) for 3DER Structure Factors (1889 Kb) Retrieve 3DER in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DER from S2C, [Save to disk] Re-refined 3der structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DER in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3der] [3der_A] [3der_B] [3der_C] [3der_D] SWISS-PROT database: [Q9WXM1] Domain found in 3DER: [MR_MLE ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---