3DFJ	Hydrolase	date	Jun 12, 2008
title	Crystal Structure Of Human Prostasin
authors	H.P.Su, K.W.Rickert, P.L.Darke, S.K.Munshi
compound		source
Molecule: Prostasin Chain: A FRAGMENT: SERINE PROTEASE DOMAIN OF PROSTASIN HEAVY Chain: 45-289; Synonym: Serine Protease 8 Ec: 3.4.21.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Prss8 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a(+)
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.988 56.241 82.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	CL	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of human prostasin, a target for the regulation of hypertension., Rickert KW, Kelley P, Byrne NJ, Diehl RE, Hall DL, Montalvo AM, Reid JC, Shipman JM, Thomas BW, Munshi SK, Darke PL, Su HP, J Biol Chem. 2008 Dec 12;283(50):34864-72. Epub 2008 Oct 14. PMID:18922802

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3dfj.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 3DFJ CSU: Contacts of Structural Units for 3DFJ Likely Quarternary Molecular Structure file(s) for 3DFJ Structure Factors (1030 Kb) Retrieve 3DFJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DFJ from S2C, [Save to disk] Re-refined 3dfj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DFJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DFJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DFJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dfj_A] [3dfj] SWISS-PROT database: [Q16651] Domain organization of [PRSS8_HUMAN] by SWISSPFAM Domain found in 3DFJ: [Tryp_SPc ] by SMART

Other resources with information on 3DFJ

Community annotation for 3DFJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---