3DGG	Immune System	date	Jun 13, 2008
title	Crystal Structure Of Fabox108
authors	J.Ren, J.E.Nettleship, R.J.Owens, Oxford Protein Production Fac (Oppf)
compound		source
Molecule: Fabox108 Light Chain Fragment Chain: A, C Synonym: Vl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_organ: Human Embryonic Kidney Cells Expression_system_vector_type: Plasmid Expression_system_plasmid: Poping-Et
Molecule: Fabox108 Heavy Chain Fragment Chain: B, D Synonym: Vh Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_organ: Human Embryonic Kidney Cells Expression_system_vector_type: Plasmid Expression_system_plasmid: Poping-Et
symmetry	Space Group: P 1 2 1	R_factor 0.187 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.225 52.142 112.123 90.00 103.14 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MG	enzyme
Primary reference	A pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells., Nettleship JE, Ren J, Rahman N, Berrow NS, Hatherley D, Neil Barclay A, Owens RJ, Protein Expr Purif. 2008 Jul 10. PMID:18662785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (3dgg.pdb1.gz) 72 Kb Biological Unit Coordinates (3dgg.pdb2.gz) 71 Kb Biological Unit Coordinates (3dgg.pdb3.gz) 139 Kb LPC: Ligand-Protein Contacts for 3DGG CSU: Contacts of Structural Units for 3DGG Likely Quarternary Molecular Structure file(s) for 3DGG Structure Factors (305 Kb) Retrieve 3DGG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DGG from S2C, [Save to disk] Re-refined 3dgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DGG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DGG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DGG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dgg] [3dgg_A] [3dgg_C] [3dgg_D] [3dgg_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3DGG: [IG_like] [IGv ] by SMART

Other resources with information on 3DGG

Community annotation for 3DGG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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