3DIE Electron Transport date Jun 20, 2008
title Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mu
authors S.Martinez-Rodriguez, R.Loris, J.Messens
compound source
Molecule: Thioredoxin
Chain: A, B
Synonym: Trx
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Trxa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (Ai)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet14b
symmetry Space Group: P 21 21 2
R_factor 0.192 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.703 84.451 34.699 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CD, FE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCoupling of domain swapping to kinetic stability in a thioredoxin mutant., Garcia-Pino A, Martinez-Rodriguez S, Wahni K, Wyns L, Loris R, Messens J, J Mol Biol. 2009 Feb 6;385(5):1590-9. Epub 2008 Dec 3. PMID:19071139
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3die.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3DIE
  • CSU: Contacts of Structural Units for 3DIE
  • Likely Quarternary Molecular Structure file(s) for 3DIE
  • Structure Factors (330 Kb)
  • Retrieve 3DIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIE from S2C, [Save to disk]
  • Re-refined 3die structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DIE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DIE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3die_A] [3die] [3die_B]
  • SWISS-PROT database: [P0A0K6]
  • Domain organization of [THIO_STAAU] by SWISSPFAM
    • Other resources with information on 3DIE
  • Community annotation for 3DIE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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