3DIF Immune System date Jun 20, 2008
title Crystal Structure Of Fabox117
authors J.E.Nettleship, J.Ren, R.J.Owens, Oxford Protein Production Fac (Oppf)
compound source
Molecule: Fabox117 Light Chain Fragment
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_organ: Human Embryonic Kidney Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Popinvl

Molecule: Fabox117 Heavy Chain Fragment
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_organ: Human Embryonic Kidney Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Popinvh
symmetry Space Group: P 1
R_factor 0.219 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.206 70.602 87.849 101.50 102.94 98.32
method X-Ray Diffractionresolution 2.40 Å
Primary referenceA pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells., Nettleship JE, Ren J, Rahman N, Berrow NS, Hatherley D, Neil Barclay A, Owens RJ, Protein Expr Purif. 2008 Jul 10. PMID:18662785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3dif.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (3dif.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 3DIF
  • Likely Quarternary Molecular Structure file(s) for 3DIF
  • Structure Factors (274 Kb)
  • Retrieve 3DIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIF from S2C, [Save to disk]
  • Re-refined 3dif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DIF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DIF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dif_D] [3dif_C] [3dif_B] [3dif] [3dif_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3DIF: [IG_like] [IGv ] by SMART
  • Other resources with information on 3DIF
  • Community annotation for 3DIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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