3DIV Oxidoreductase date Jun 21, 2008
title Crystal Structure Of Laccase From Cerrena Maxima At 1.76a Re
authors A.V.Lyashenko, Y.N.Zhukova, A.M.Mikhailov
compound source
Molecule: Laccase
Chain: A
Ec: 1.10.3.2
 Organism_scientific: Cerrena
Organism_taxid: 90311
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.581 77.101 130.884 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand BMA, CU, MAN, NAG, NIY enzyme Oxidoreductase E.C.1.10.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (3div.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3DIV
  • CSU: Contacts of Structural Units for 3DIV
  • Likely Quarternary Molecular Structure file(s) for 3DIV
  • Structure Factors (795 Kb)
  • Retrieve 3DIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIV from S2C, [Save to disk]
  • Re-refined 3div structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DIV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DIV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3div] [3div_A]
  • SWISS-PROT database: [D0VWU3]
  • Domain organization of [D0VWU3_9APHY] by SWISSPFAM
    • Other resources with information on 3DIV
  • Community annotation for 3DIV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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