3DJ1 Signaling Protein date Jun 21, 2008
title Crystal Structure Of Tip-1 Wild Type
authors Y.Shen
compound source
Molecule: Tax1-Binding Protein 3
Chain: A, B
Synonym: Tax Interaction Protein 1, Tip-1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.215 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.757 86.757 80.321 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis of beta-Catenin Recognition by Tax-interacting Protein-1., Zhang J, Yan X, Shi C, Yang X, Guo Y, Tian C, Long J, Shen Y, J Mol Biol. 2008 Sep 21. PMID:18835279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3dj1.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3dj1.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (3dj1.pdb3.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 3DJ1
  • CSU: Contacts of Structural Units for 3DJ1
  • Likely Quarternary Molecular Structure file(s) for 3DJ1
  • Structure Factors (340 Kb)
  • Retrieve 3DJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DJ1 from S2C, [Save to disk]
  • Re-refined 3dj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DJ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DJ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3dj1, region J:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1m3dj1, region J:5-114 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dj1_A] [3dj1_B] [3dj1]
  • SWISS-PROT database: [Q9DBG9]
  • Domain organization of [TX1B3_MOUSE] by SWISSPFAM
  • Domain found in 3DJ1: [PDZ ] by SMART
    • Other resources with information on 3DJ1
  • Community annotation for 3DJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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