3DKF Oncoprotein date Jun 24, 2008
title Structure Of Met Receptor Tyrosine Kinase In Complex With In Sgx-523
authors J.Hendle
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Synonym: Hgf Receptor, Hgfsf Receptor, Proto-Oncogene C-Me Factor Receptor, Sf Receptor, Tyrosine-Protein Kinase Met;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met, Hcg_38705, Tcag7.66
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.089 46.679 158.482 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, SX8 BindingDB enzyme
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo., Buchanan SG, Hendle J, Lee PS, Smith CR, Bounaud PY, Jessen KA, Tang CM, Huser NH, Felce JD, Froning KJ, Peterman MC, Aubol BE, Gessert SF, Sauder JM, Schwinn KD, Russell M, Rooney IA, Adams J, Leon BC, Do TH, Blaney JM, Sprengeler PA, Thompson DA, Smyth L, Pelletier LA, Atwell S, Holme K, Wasserman SR, Emtage S, Burley SK, Reich SH, Mol Cancer Ther. 2009 Dec;8(12):3181-90. Epub . PMID:19934279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3dkf.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3DKF
  • CSU: Contacts of Structural Units for 3DKF
  • Likely Quarternary Molecular Structure file(s) for 3DKF
  • Structure Factors (214 Kb)
  • Retrieve 3DKF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DKF from S2C, [Save to disk]
  • Re-refined 3dkf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DKF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DKF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DKF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dkf] [3dkf_A]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 3DKF: [TyrKc ] by SMART
  • Other resources with information on 3DKF
  • Community annotation for 3DKF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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