3DKO Transferase date Jun 25, 2008
title Complex Between The Kinase Domain Of Human Ephrin Type-A Rec (Epha7) And Inhibitor Alw-II-49-7
authors J.R.Walker, F.Syeda, N.Gray, C.Butler-Cole, C.Bountra, M.Wolkstro C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound source
Molecule: Ephrin Type-A Receptor 7
Chain: A
Fragment: Kinase Domain, Unp Residues 590-899
Synonym: Tyrosine-Protein Kinase Receptor Ehk-3, Eph Homolo 3, Receptor Protein-Tyrosine Kinase Hek11;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Brain
Gene: Epha7, Ehk3, Hek11
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Ch
symmetry Space Group: P 65
R_factor 0.189 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.658 52.658 217.059 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand IHZ enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3dko.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3DKO
  • CSU: Contacts of Structural Units for 3DKO
  • Likely Quarternary Molecular Structure file(s) for 3DKO
  • Structure Factors (353 Kb)
  • Retrieve 3DKO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DKO from S2C, [Save to disk]
  • Re-refined 3dko structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DKO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DKO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DKO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dko_A] [3dko]
  • SWISS-PROT database: [Q15375]
  • Domain organization of [EPHA7_HUMAN] by SWISSPFAM
  • Domain found in 3DKO: [TyrKc ] by SMART
    • Other resources with information on 3DKO
  • Community annotation for 3DKO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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