3DLM Transferase date Jun 27, 2008
title Crystal Structure Of Tudor Domain Of Human Histone-Lysine N- Methyltransferase Setdb1
authors M.F.Amaya, L.Dombrovski, P.Loppnau, C.Bountra, J.Weigelt, C.H.Arr A.M.Edwards, A.Bochkarev, J.Min, H.Wu, Structural Genomics Cons (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setdb1
Chain: A
Synonym: Set Domain Bifurcated 1, Erg-Associated Protein Wi Domain, Eset, Histone H3-K9 Methyltransferase 4, H3-K9-Hmta Lysine N- Methyltransferase 1e;
Ec: 2.1.1.43
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Setdb1, Kiaa0067, Kmt1e
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.518 63.689 69.083 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand
enzyme Transferase E.C.2.1.1.43 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3dlm.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3DLM
  • Likely Quarternary Molecular Structure file(s) for 3DLM
  • Structure Factors (365 Kb)
  • Retrieve 3DLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DLM from S2C, [Save to disk]
  • Re-refined 3dlm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DLM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DLM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dlm_A] [3dlm]
  • SWISS-PROT database: [Q15047]
  • Domain organization of [SETB1_HUMAN] by SWISSPFAM
  • Domain found in 3DLM: [TUDOR ] by SMART
  • Other resources with information on 3DLM
  • Community annotation for 3DLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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