3DLS Transferase date Jun 29, 2008
title Crystal Structure Of Human Pas Kinase Bound To Adp
authors S.Antonysamy, J.B.Bonanno, R.Romero, M.Russell, M.Iizuka, T.Gheyi S.R.Wasserman, J.Rutter, J.M.Sauder, S.K.Burley, New York Sgx R Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Pas Domain-Containing Serinethreonine-Protein Ki
Chain: A, B, C, D, E, F
Fragment: Protein Kinase Domain
Synonym: Pas-Kinase, Paskin, Hpask
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pask, Kiaa0135
Expression_system: Baculovirus
Expression_system_strain: Sf9
symmetry Space Group: P 1
R_factor 0.241 R_Free 0.297
length a length b length c angle alpha angle beta angle gamma
85.778 85.840 94.154 77.28 77.50 60.09
method X-Ray Diffractionresolution 2.30 Å
ligand ADP, MG enzyme Transferase E.C. BRENDA
F, A, D, C, E, B

Primary referenceStructural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation., Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley SK, Rutter J, J Biol Chem. 2010 Dec 24;285(52):41034-43. Epub 2010 Oct 13. PMID:20943661
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (3dls.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3dls.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (3dls.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (3dls.pdb4.gz) 49 Kb
  • Biological Unit Coordinates (3dls.pdb5.gz) 50 Kb
  • Biological Unit Coordinates (3dls.pdb6.gz) 49 Kb
  • Biological Unit Coordinates (3dls.pdb7.gz) 139 Kb
  • Biological Unit Coordinates (3dls.pdb8.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 3DLS
  • CSU: Contacts of Structural Units for 3DLS
  • Likely Quarternary Molecular Structure file(s) for 3DLS
  • Structure Factors (667 Kb)
  • Retrieve 3DLS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DLS from S2C, [Save to disk]
  • Re-refined 3dls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DLS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DLS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DLS, from MSDmotif at EBI
  • Fold representative 3dls from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dls_F] [3dls] [3dls_E] [3dls_A] [3dls_C] [3dls_B] [3dls_D]
  • SWISS-PROT database: [Q96RG2]
  • Domain organization of [PASK_HUMAN] by SWISSPFAM
  • Domain found in 3DLS: [S_TKc ] by SMART
  • Other resources with information on 3DLS
  • Community annotation for 3DLS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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