3DNT Transferase date Jul 02, 2008
title Structures Of Mdt Proteins
authors M.A.Schumacher
compound source
Molecule: Protein Hipa
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Gene: Hipa, B1507, Jw1500
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad22
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.540 84.090 69.250 90.00 91.56 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand ATP, MG, MSE, SO4 enzyme
note 3DNT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • bacterial-type RNA polymeras...


    • Primary referenceMolecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB., Schumacher MA, Piro KM, Xu W, Hansen S, Lewis K, Brennan RG, Science. 2009 Jan 16;323(5912):396-401. PMID:19150849
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3dnt.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3dnt.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3DNT
  • CSU: Contacts of Structural Units for 3DNT
  • Likely Quarternary Molecular Structure file(s) for 3DNT
  • Structure Factors (1284 Kb)
  • Retrieve 3DNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DNT from S2C, [Save to disk]
  • Re-refined 3dnt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DNT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DNT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dnt_A] [3dnt_B] [3dnt]
  • SWISS-PROT database: [P23874]
  • Domain organization of [HIPA_ECOLI] by SWISSPFAM
    • Other resources with information on 3DNT
  • Community annotation for 3DNT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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