3DO7	Transcription Dna	date	Jul 03, 2008
title	X-Ray Structure Of A Nf-Kb P52relbdna Complex
authors	A.Fusco, D.B.Huang, D.Miller, D.Vu, G.Ghosh
compound		source
Molecule: Avian Reticuloendotheliosis Viral (V-Rel) Oncogene Related B; Chain: A Fragment: Rhr (Unp Residues 88-383) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Relb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: T7 Promoter Expression_system_plasmid: Pet15b
Molecule: Nuclear Factor Nf-Kappa-B P100 Subunit Chain: B Fragment: Rhr (Unp Residues 37-329) Synonym: Dna-Binding Factor Kbf2, H2tf1, Lymphocyte Translocation Chromosome 10, Oncogene Lyt-10, Lyt10, Nuclear Factor Nf-Kappa-B P52 Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nfkb2, Lyt10 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: T7 Promoter Expression_system_plasmid: Pet11a
Molecule: 5'- D(Dcpdgpdgpdgpdapdapdtpdtpdcpdcpdc)-3'; Chain: C, D, E Fragment: Kappa B Site Engineered: Yes Other_details: Kappab Dna		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.230 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.640 124.130 189.590 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.05 Å
Gene Ontology	Chain Function Process Component A B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk] Biological Unit Coordinates (3do7.pdb1.gz) 104 Kb Biological Unit Coordinates (3do7.pdb2.gz) 10 Kb CSU: Contacts of Structural Units for 3DO7 Likely Quarternary Molecular Structure file(s) for 3DO7 Structure Factors (95 Kb) Retrieve 3DO7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DO7 from S2C, [Save to disk] Re-refined 3do7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DO7 in 3D

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Visual 3D analysis of 3DO7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DO7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3do7_C] [3do7_A] [3do7_B] [3do7_E] [3do7_D] [3do7] SWISS-PROT database: [Q00653] [Q04863] Domain organization of [NFKB2_HUMAN] [RELB_MOUSE] by SWISSPFAM Domain found in 3DO7: [IPT ] by SMART

Other resources with information on 3DO7

Community annotation for 3DO7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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