3DOF Signaling Protein Hydrolase date Jul 04, 2008
title Complex Of Arl2 And Bart, Crystal Form 2
authors T.Zhang, S.Li, J.Ding
compound source
Molecule: Adp-Ribosylation Factor-Like Protein 2
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b

Molecule: Adp-Ribosylation Factor-Like Protein 2-Binding Pr
Chain: B
Synonym: Arf-Like 2-Binding Protein, Binder Of Arf2 Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 21 21 21
R_factor 0.253 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.663 45.165 175.879 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • transcription coactivator ac...
  • GTPase regulator activity


  • Primary referenceCrystal structure of the ARL2-GTP-BART complex reveals a novel recognition and binding mode of small GTPase with effector., Zhang T, Li S, Zhang Y, Zhong C, Lai Z, Ding J, Structure. 2009 Apr 15;17(4):602-10. PMID:19368893
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3dof.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 3DOF
  • CSU: Contacts of Structural Units for 3DOF
  • Likely Quarternary Molecular Structure file(s) for 3DOF
  • Structure Factors (43 Kb)
  • Retrieve 3DOF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DOF from S2C, [Save to disk]
  • Re-refined 3dof structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DOF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DOF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DOF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dof_A] [3dof] [3dof_B]
  • SWISS-PROT database: [Q9Y2Y0] [P36404]
  • Domain organization of [AR2BP_HUMAN] [ARL2_HUMAN] by SWISSPFAM
  • Domain found in 3DOF: [ARF ] by SMART
  • Other resources with information on 3DOF
  • Community annotation for 3DOF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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