3DRP	Transferase	date	Jul 11, 2008
title	Hiv Reverse Transcriptase In Complex With Inhibitor R8e
authors	Y.Yan, S.Prasad
compound		source
Molecule: Reverse Transcriptaseribonuclease H Chain: A Fragment: Gag-Pol Polyprotein P66 Subunit Synonym: P66 Rt Ec: 2.7.7.49, 2.7.7.7, 3.1.26.4 Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Hxb2 Isolate Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: P51 Rt Chain: B Fragment: Gag-Pol Polyprotein P51 Subunit Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Hxb2 Isolate Gene: Gag-Pol Expression_system: Escherichia Coli
symmetry	Space Group: C 2 2 21	R_factor 0.187 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.860 155.030 155.540 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	R8E	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Discovery of 3-{5-[(6-Amino-1H-pyrazolo[3,4-b]pyridine-3-yl)methoxy]-2-chlorophenoxy}-5 -chlorobenzonitrile (MK-4965): A Potent, Orally Bioavailable HIV-1 Non-Nucleoside Reverse Transcriptase Inhibitor with Improved Potency against Key Mutant Viruses., Tucker TJ, Sisko JT, Tynebor RM, Williams TM, Felock PJ, Flynn JA, Lai MT, Liang Y, McGaughey G, Liu M, Miller M, Moyer G, Munshi V, Perlow-Poehnelt R, Prasad S, Reid JC, Sanchez R, Torrent M, Vacca JP, Wan BL, Yan Y, J Med Chem. 2008 Oct 1. PMID:18826204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (3drp.pdb1.gz) 166 Kb LPC: Ligand-Protein Contacts for 3DRP CSU: Contacts of Structural Units for 3DRP Likely Quarternary Molecular Structure file(s) for 3DRP Structure Factors (883 Kb) Retrieve 3DRP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DRP from S2C, [Save to disk] Re-refined 3drp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DRP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DRP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DRP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3drp_A] [3drp] [3drp_B] SWISS-PROT database: [P04585] Domain organization of [POL_HV1H2] by SWISSPFAM

Other resources with information on 3DRP

Community annotation for 3DRP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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