3DSH	Dna Binding Protein	date	Jul 12, 2008
title	Crystal Structure Of Dimeric Interferon Regulatory Factor 5 Transactivation Domain
authors	W.Chen, S.S.Lam, H.Srinath, Z.Jiang, J.J.Correia, C.Schiffer, K.A.Fitzgerald, K.Lin, W.E.Royer Jr.
compound		source
Molecule: Interferon Regulatory Factor 5 Chain: A Fragment: Irf-5 Transactivation Domain (Unp Residues 232-47 Synonym: Irf-5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Irf5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 31 2 1	R_factor 0.204 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.162 66.162 156.254 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5., Chen W, Lam SS, Srinath H, Jiang Z, Correia JJ, Schiffer CA, Fitzgerald KA, Lin K, Royer WE Jr, Nat Struct Mol Biol. 2008 Nov;15(11):1213-20. Epub 2008 Oct 5. PMID:18836453

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (3dsh.pdb1.gz) 82 Kb CSU: Contacts of Structural Units for 3DSH Likely Quarternary Molecular Structure file(s) for 3DSH Structure Factors (387 Kb) Retrieve 3DSH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DSH from S2C, [Save to disk] Re-refined 3dsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DSH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DSH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DSH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dsh] [3dsh_A] SWISS-PROT database: [Q13568] Domain organization of [IRF5_HUMAN] by SWISSPFAM Domain found in 3DSH: [IRF-3 ] by SMART

Other resources with information on 3DSH

Community annotation for 3DSH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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