3DST Transferase date Jul 14, 2008
title Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)In Comple Geranylgeranyl Pyrophosphate
authors Z.Guo, S.Yu, R.S.Goody, K.Alexandrov, W.Blankenfeldt
compound source
Molecule: Geranylgeranyl Transferase Type-2 Subunit Alpha
Chain: A
Fragment: Pfta Domains, Unp Residues 1-237 And 353-441
Synonym: Geranylgeranyl Transferase Type II Subunit Alpha, Geranylgeranyltransferase Subunit Alpha, Rab Geranyl- Geranyltransferase Subunit Alpha, Rab Gg Transferase Alpha, Ggtase Alpha;
Ec: 2.5.1.60
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Rabggta, Ggta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon-Plus Ril (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgatev And Pet30a
Other_details: Coexpression Of Engineered Alpha-Subunit Fro And Beta-Subunit From Pet3 0a;

Molecule: Geranylgeranyl Transferase Type-2 Subunit Beta
Chain: B
Synonym: Geranylgeranyl Transferase Type II Subunit Beta, G Beta, Type II Protein Geranyl-Geranyltransferase Subunit Be Geranylgeranyltransferase Subunit Beta, Rab Geranyl- Geranyltransferase Subunit Beta, Rab Gg Transferase Beta, R Beta;
Ec: 2.5.1.60
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Rabggtb, Ggtb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon-Plus Ril (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgatev And Pet30a
Other_details: Coexpression Of Engineered Alpha-Subunit Fro And Beta-Subunit From Pet3 0a
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.264 90.618 114.478 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, GRG, ZN enzyme Transferase E.C.2.5.1.60 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructures of RabGGTase-substrate/product complexes provide insights into the evolution of protein prenylation., Guo Z, Wu YW, Das D, Delon C, Cramer J, Yu S, Thuns S, Lupilova N, Waldmann H, Brunsveld L, Goody RS, Alexandrov K, Blankenfeldt W, EMBO J. 2008 Aug 28. PMID:18756270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (3dst.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 3DST
  • CSU: Contacts of Structural Units for 3DST
  • Likely Quarternary Molecular Structure file(s) for 3DST
  • Structure Factors (797 Kb)
  • Retrieve 3DST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DST from S2C, [Save to disk]
  • Re-refined 3dst structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DST
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DST, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dst_B] [3dst] [3dst_A]
  • SWISS-PROT database: [Q08602] [Q08603]
  • Domain organization of [PGTA_RAT] [PGTB2_RAT] by SWISSPFAM
  • Other resources with information on 3DST
  • Community annotation for 3DST at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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