3DUP Hydrolase date Jul 17, 2008
title Crystal Structure Of Muttnudix Family Hydrolase From Rhodos Rubrum Atcc 11170
authors Y.Patskovsky, U.A.Ramagopal, R.Toro, J.Freeman, S.Chang, C.Grosho J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Muttnudix Family Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodospirillum Rubrum Atcc 11170
Organism_taxid: 269796
Gene: Rru_a0214
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.169 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.320 115.320 115.935 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, MSE, PO4 enzyme
Gene RRU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3dup.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 3DUP
  • CSU: Contacts of Structural Units for 3DUP
  • Likely Quarternary Molecular Structure file(s) for 3DUP
  • Structure Factors (1662 Kb)
  • Retrieve 3DUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DUP from S2C, [Save to disk]
  • Re-refined 3dup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DUP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dup_B] [3dup] [3dup_A]
  • SWISS-PROT database: [Q2RXX6]
  • Domain organization of [Q2RXX6_RHORT] by SWISSPFAM
    • Other resources with information on 3DUP
  • Community annotation for 3DUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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