OCA Atlas for 3DV1

3DV1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AR9 BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A, C

Primary reference

Macrocyclic peptidomimetic beta-secretase (BACE-1) inhibitors with activity in vivo., Machauer R, Laumen K, Veenstra S, Rondeau JM, Tintelnot-Blomley M, Betschart C, Jaton AL, Desrayaud S, Staufenbiel M, Rabe S, Paganetti P, Neumann U, Bioorg Med Chem Lett. 2009 Mar 1;19(5):1366-70. Epub 2009 Jan 22. PMID:19195887

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]

Biological Unit Coordinates (3dv1.pdb1.gz) 66 Kb

Biological Unit Coordinates (3dv1.pdb2.gz) 66 Kb

Biological Unit Coordinates (3dv1.pdb3.gz) 67 Kb

LPC: Ligand-Protein Contacts for 3DV1

CSU: Contacts of Structural Units for 3DV1

Likely Quarternary Molecular Structure file(s) for 3DV1

Structure Factors (871 Kb)

Retrieve 3DV1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DV1 from S2C, [Save to disk]

Re-refined 3dv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DV1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dv1] [3dv1_A] [3dv1_B] [3dv1_C]

SWISS-PROT database: [P56817]

Belongs to the β-amyloid cleaving enzyme (bace1) family

according to TCDB.

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