3DVD Lyase date Jul 18, 2008
title X-Ray Crystal Structure Of Mutant N62d Of Human Carbonic Anhydrase II
authors B.S.Avvaru
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Ca-II, Carbonate Dehydratase II, Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.772 41.711 72.831 90.00 104.56 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRole of Hydrophilic Residues in Proton Transfer during Catalysis by Human Carbonic Anhydrase II., Zheng J, Avvaru BS, Tu C, McKenna R, Silverman DN, Biochemistry. 2008 Oct 23. PMID:18942852
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3dvd.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3DVD
  • CSU: Contacts of Structural Units for 3DVD
  • Likely Quarternary Molecular Structure file(s) for 3DVD
  • Structure Factors (387 Kb)
  • Retrieve 3DVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DVD from S2C, [Save to disk]
  • Re-refined 3dvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DVD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DVD, from MSDmotif at EBI
  • Fold representative 3dvd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dvd] [3dvd_A]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 3DVD: [Carb_anhydrase ] by SMART
  • Other resources with information on 3DVD
  • Community annotation for 3DVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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