3DW5 Rna date Jul 21, 2008
title Crystal Structure Of The Sarcinricin Domain From E. Coli 23 U2656-Och3 Modified
authors V.Olieric, U.Rieder, K.Lang, A.Serganov, C.Schulze-Briese, R.Micu P.Dumas, E.Ennifar
compound source
Molecule: Sarcinricin Domain From E. Coli 23 S Rrna
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 43
R_factor 0.149 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.560 29.560 76.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.96 Å
ligand OMU enzyme
Primary referenceA fast selenium derivatization strategy for crystallization and phasing of RNA structures., Olieric V, Rieder U, Lang K, Serganov A, Schulze-Briese C, Micura R, Dumas P, Ennifar E, RNA. 2009 Apr;15(4):707-15. Epub 2009 Feb 18. PMID:19228585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (3dw5.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3DW5
  • CSU: Contacts of Structural Units for 3DW5
  • Likely Quarternary Molecular Structure file(s) for 3DW5
  • Structure Factors (242 Kb)
  • Retrieve 3DW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DW5 from S2C, [Save to disk]
  • Re-refined 3dw5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DW5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DW5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dw5] [3dw5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3DW5
  • Community annotation for 3DW5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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