3DWL Structural Protein date Jul 22, 2008
title Crystal Structure Of Fission Yeast Arp23 Complex Lacking Th Subunit
authors B.J.Nolen, T.D.Pollard
compound source
Molecule: Actin-Related Protein 3
Chain: A, B
Synonym: Actin-Like Protein 3
Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Strain: Tm011

Molecule: Actin-Related Protein 23 Complex Subunit 1
Chain: C, H
Synonym: Arp23 Complex 41 Kda Subunit, P41-Arc

Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Strain: Tm011

Molecule: Actin-Related Protein 23 Complex Subunit 2
Chain: D, I
Synonym: Arp23 Complex 34 Kda Subunit, P34-Arc

Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Strain: Tm011

Molecule: Actin-Related Protein 23 Complex Subunit 3
Chain: E, J
Synonym: Arp23 Complex 21 Kda Subunit, P21-Arc

Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Strain: Tm011

Molecule: Actin-Related Protein 23 Complex Subunit 4
Chain: F, K
Synonym: Arp23 Complex 20 Kda, P20-Arc

Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Strain: Tm011

Molecule: Actin-Related Protein 23 Complex Subunit 5
Chain: G, L
Synonym: Arp23 Complex 16 Kda Subunit, P16-Arc

Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Strain: Tm011
symmetry Space Group: P 42 2 2
R_factor 0.324 R_Free 0.344
crystal
cell
length a length b length c angle alpha angle beta angle gamma
218.967 218.967 315.049 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.78 Å
ligand ATP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B

  • Arp2/3 protein complex
  • D, I

  • Arp2/3 protein complex
  • F, K

  • Arp2/3 protein complex
  • G, L

  • Arp2/3 protein complex
  • H, C

  • Arp2/3 protein complex
  • J, E


    Primary referenceStructure and biochemical properties of fission yeast ARP2/3 complex lacking the ARP2 subunit., Nolen BJ, Pollard TD, J Biol Chem. 2008 Jul 18. PMID:18640983
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk]
  • Biological Unit Coordinates (3dwl.pdb1.gz) 187 Kb
  • Biological Unit Coordinates (3dwl.pdb2.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 3DWL
  • CSU: Contacts of Structural Units for 3DWL
  • Likely Quarternary Molecular Structure file(s) for 3DWL
  • Structure Factors (559 Kb)
  • Retrieve 3DWL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DWL from S2C, [Save to disk]
  • Re-refined 3dwl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DWL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DWL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DWL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dwl_D] [3dwl_C] [3dwl_B] [3dwl_J] [3dwl_E] [3dwl_F] [3dwl_I] [3dwl_G] [3dwl_L] [3dwl_K] [3dwl] [3dwl_A] [3dwl_H]
  • SWISS-PROT database: [P32390] [P78774] [O14241] [Q9Y7J4] [Q92352] [Q10316]
  • Domain organization of [ARP3_SCHPO] [ARPC1_SCHPO] [ARPC2_SCHPO] [ARPC3_SCHPO] [ARPC4_SCHPO] [ARPC5_SCHPO] by SWISSPFAM
  • Domains found in 3DWL: [ACTIN] [WD40 ] by SMART
  • Other resources with information on 3DWL
  • Community annotation for 3DWL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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