3DX9	Immune System	date	Jul 24, 2008
title	Crystal Structure Of The Dm1 Tcr At 2.75a
authors	J.K.Archbold, W.A.Macdonald, S.Gras, J.Rossjohn
compound		source
Molecule: Dm1 T Cell Receptor Alpha Chain Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
Molecule: Dm1 T Cell Receptor Beta Chain Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.740 70.727 154.412 90.00 94.69 90.00
method	X-Ray Diffraction	resolution	2.75 Å
Primary reference	Natural micropolymorphism in human leukocyte antigens provides a basis for genetic control of antigen recognition., Archbold JK, Macdonald WA, Gras S, Ely LK, Miles JJ, Bell MJ, Brennan RM, Beddoe T, Wilce MC, Clements CS, Purcell AW, McCluskey J, Burrows SR, Rossjohn J, J Exp Med. 2009 Jan 16;206(1):209-19. Epub 2009 Jan 12. PMID:19139173

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk] Biological Unit Coordinates (3dx9.pdb1.gz) 73 Kb Biological Unit Coordinates (3dx9.pdb2.gz) 74 Kb CSU: Contacts of Structural Units for 3DX9 Likely Quarternary Molecular Structure file(s) for 3DX9 Structure Factors (351 Kb) Retrieve 3DX9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DX9 from S2C, [Save to disk] Re-refined 3dx9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DX9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DX9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DX9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dx9_B] [3dx9_D] [3dx9] [3dx9_C] [3dx9_A] SWISS-PROT database: [P01848] [P01850] Domain organization of [TCA_HUMAN] [TCB_HUMAN] by SWISSPFAM Domains found in 3DX9: [IG] [IG_like] [IGc1 ] by SMART

Other resources with information on 3DX9

Community annotation for 3DX9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---