OCA Atlas for 3DXJ

3DXJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, MPD, NE6, PO4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, N
E, O
F, P	bacterial sigma factor activ...
L, B, A, K
M, C

Primary reference

The RNA polymerase "switch region" is a target for inhibitors., Mukhopadhyay J, Das K, Ismail S, Koppstein D, Jang M, Hudson B, Sarafianos S, Tuske S, Patel J, Jansen R, Irschik H, Arnold E, Ebright RH, Cell. 2008 Oct 17;135(2):295-307. PMID:18957204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1118 Kb) [Save to disk]

Biological Unit Coordinates (3dxj.pdb1.gz) 561 Kb

Biological Unit Coordinates (3dxj.pdb2.gz) 564 Kb

LPC: Ligand-Protein Contacts for 3DXJ

CSU: Contacts of Structural Units for 3DXJ

Likely Quarternary Molecular Structure file(s) for 3DXJ

Structure Factors (2563 Kb)

Retrieve 3DXJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DXJ from S2C, [Save to disk]

Re-refined 3dxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DXJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dxj] [3dxj_A] [3dxj_B] [3dxj_C] [3dxj_D] [3dxj_E] [3dxj_F] [3dxj_K] [3dxj_L] [3dxj_M] [3dxj_N] [3dxj_O] [3dxj_P]

SWISS-PROT database: [Q5SKW1] [Q5SHR6] [Q8RQE9] [Q8RQE8] [Q8RQE7]

Domains found in 3DXJ: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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