3DXP Crystal structure of a putative aminoglycoside phosphotransferase (reut_a1007) from ralstonia eutropha jmp134 at 2.32 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.32
ligand ACT, CA, EDO, MSE enzyme
Gene REUT ; YP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3dxp.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 3DXP
  • CSU: Contacts of Structural Units for 3DXP
  • Likely Quarternary Molecular Structure file(s) for 3DXP
  • Structure Factors (2039 Kb)
  • Retrieve 3DXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DXP from S2C, [Save to disk]
  • Re-refined 3dxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DXP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DXP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dxp_A] [3dxp]
  • SWISS-PROT database: [Q473P7]
  • Domain organization of [Q473P7_RALEJ] by SWISSPFAM
  • Other resources with information on 3DXP
  • Community annotation for 3DXP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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