3DXR Protein Transport date Jul 24, 2008
title Crystal Structure Of The Yeast Inter-Membrane Space Chaperon Tim9.10
authors C.T.Webb, J.M.Gulbis
compound source
Molecule: Mitochondrial Import Inner Membrane Translocase S Tim9;
Chain: A
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Tim9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami De3 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2

Molecule: Mitochondrial Import Inner Membrane Translocase S Tim10;
Chain: B
Synonym: Mitochondrial Intermembrane Protein Mrs11
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Mrs11, Tim10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami De3 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2
symmetry Space Group: H 3 2
R_factor 0.245 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.198 58.198 243.731 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
note 3DXR is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural and Functional Requirements for Activity of the Tim9-Tim10 Complex in Mitochondrial Protein Import., Baker MJ, Webb CT, Stroud DA, Palmer CS, Frazier AE, Guiard B, Chacinska A, Gulbis JM, Ryan MT, Mol Biol Cell. 2008 Nov 26. PMID:19037098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3dxr.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (3dxr.pdb2.gz) 130 Kb
  • CSU: Contacts of Structural Units for 3DXR
  • Likely Quarternary Molecular Structure file(s) for 3DXR
  • Structure Factors (47 Kb)
  • Retrieve 3DXR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DXR from S2C, [Save to disk]
  • Re-refined 3dxr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DXR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DXR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DXR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dxr] [3dxr_B] [3dxr_A]
  • SWISS-PROT database: [P87108] [O74700]
  • Belongs to the mitochondrial protein translocase (mpt) family according to TCDB.
  • Domain organization of [TIM10_YEAST] [TIM9_YEAST] by SWISSPFAM
  • Other resources with information on 3DXR
  • Community annotation for 3DXR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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