3DY7	Transferase	date	Jul 25, 2008
title	X-Ray Structure Of The Human Mitogen-Activated Protein Kinas (Mek1) In A Complex With Ligand And Mgatp
authors	J.F.Ohren, A.Pavlovsky, E.Zhang
compound		source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase Chain: A Fragment: Protein Kinase Domain, Unp Residues 62-393 Synonym: Map Kinase Kinase 1, Mapkk 1, Erk Activator Kinase Mapkerk Kinase 1, Mek1; Ec: 2.7.12.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map2k1, Mek1, Prkmk1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24b
symmetry	Space Group: P 62	R_factor 0.247 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.754 81.754 128.893 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	1CX, ATP, MG BindingDB	enzyme	Transferase E.C.2.7.12.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Beyond the MEK-pocket: can current MEK kinase inhibitors be utilized to synthesize novel type III NCKIs? Does the MEK-pocket exist in kinases other than MEK?, Tecle H, Shao J, Li Y, Kothe M, Kazmirski S, Penzotti J, Ding YH, Ohren J, Moshinsky D, Coli R, Jhawar N, Bora E, Jacques-O'Hagan S, Wu J, Bioorg Med Chem Lett. 2009 Jan 1;19(1):226-9. Epub 2008 Oct 31. PMID:19019675

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (3dy7.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 3DY7 CSU: Contacts of Structural Units for 3DY7 Likely Quarternary Molecular Structure file(s) for 3DY7 Structure Factors (195 Kb) Retrieve 3DY7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DY7 from S2C, [Save to disk] Re-refined 3dy7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DY7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DY7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DY7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dy7] [3dy7_A] SWISS-PROT database: [Q02750] Domain organization of [MP2K1_HUMAN] by SWISSPFAM Domain found in 3DY7: [S_TKc ] by SMART

Other resources with information on 3DY7

Community annotation for 3DY7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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