3DYB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ADA, CA, EPE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	High-resolution structure of proteinase K cocrystallized with digalacturonic acid., Larson SB, Day JS, Nguyen C, Cudney R, McPherson A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt, 3):192-8. Epub 2009 Feb 12. PMID:19255463

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk] Biological Unit Coordinates (3dyb.pdb1.gz) 138 Kb LPC: Ligand-Protein Contacts for 3DYB CSU: Contacts of Structural Units for 3DYB Likely Quarternary Molecular Structure file(s) for 3DYB Structure Factors (718 Kb) Retrieve 3DYB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DYB from S2C, [Save to disk] Re-refined 3dyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DYB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dyb] [3dyb_A] SWISS-PROT database: [P06873]

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