3DYL		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	FMT, IBM, MG, MN, PCG BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the catalytic mechanism of human phosphodiesterase 9., Liu S, Mansour MN, Dillman KS, Perez JR, Danley DE, Aeed PA, Simons SP, Lemotte PK, Menniti FS, Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13309-14. Epub 2008 Aug 29. PMID:18757755

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (3dyl.pdb1.gz) 56 Kb Biological Unit Coordinates (3dyl.pdb2.gz) 56 Kb LPC: Ligand-Protein Contacts for 3DYL CSU: Contacts of Structural Units for 3DYL Likely Quarternary Molecular Structure file(s) for 3DYL Structure Factors (428 Kb) Retrieve 3DYL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DYL from S2C, [Save to disk] Re-refined 3dyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DYL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dyl] [3dyl_A] [3dyl_B] SWISS-PROT database: [O76083] Domain found in 3DYL: [HDc ] by SMART

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