3E1I Blood Clotting date Aug 04, 2008
title Crystal Structure Of Bbetad432a Variant Fibrinogen Fragment Peptide Ligand Gly-His-Arg-Pro-Amide
authors S.R.Bowley, S.T.Lord
compound source
Molecule: Fibrinogen Alpha Chain
Chain: A, D
Fragment: Alpha Chain
Synonym: Fibrinopeptide A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fga
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlp

Molecule: Fibrinogen Beta Chain
Chain: B, E
Fragment: Beta Chain
Synonym: Fibrinopeptide B
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgb
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlp

Molecule: Fibrinogen Gamma Chain
Chain: C, F
Fragment: Gamma Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgg, Pro2061
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlp

Molecule: Gly-His-Arg-Pro-Amide
Chain: G, H
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.476 146.596 228.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, NAG enzyme
note 3E1I is a representative structure
Primary referenceFibrinogen variant B{beta}D432A has normal polymerization but does not bind knob "B", Bowley SR, Lord ST, Blood. 2008 Dec 15. PMID:19075185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (3e1i.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (3e1i.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3E1I
  • CSU: Contacts of Structural Units for 3E1I
  • Likely Quarternary Molecular Structure file(s) for 3E1I
  • Structure Factors (1262 Kb)
  • Retrieve 3E1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E1I from S2C, [Save to disk]
  • Re-refined 3e1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E1I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E1I, from MSDmotif at EBI
  • Fold representative 3e1i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e1i_E] [3e1i_F] [3e1i_B] [3e1i_D] [3e1i_C] [3e1i_H] [3e1i] [3e1i_G] [3e1i_A]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 3E1I: [FBG ] by SMART
  • Other resources with information on 3E1I
  • Community annotation for 3E1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science