3E1X Hydrolase date Aug 04, 2008
title The Crystal Structure Of Apo Prostasin At 1.7 Angstroms Reso
authors G.Spraggon, M.Hornsby, A.Shipway, J.L.Harris, S.A.Lesley
compound source
Molecule: Prostasin
Chain: B
Fragment: Unp Residues 45-305
Synonym: Serine Protease 8, Prostasin Light Chain, Prostasi Chain;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prss8
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.556 54.071 82.678 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceActive site conformational changes of prostasin provide a new mechanism of protease regulation by divalent cations., Spraggon G, Hornsby M, Shipway A, Tully DC, Bursulaya B, Danahay H, Harris JL, Lesley SA, Protein Sci. 2009 May;18(5):1081-94. PMID:19388054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3e1x.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3E1X
  • CSU: Contacts of Structural Units for 3E1X
  • Likely Quarternary Molecular Structure file(s) for 3E1X
  • Structure Factors (198 Kb)
  • Retrieve 3E1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E1X from S2C, [Save to disk]
  • Re-refined 3e1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E1X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E1X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e1x_B] [3e1x]
  • SWISS-PROT database: [Q16651]
  • Domain organization of [PRSS8_HUMAN] by SWISSPFAM
  • Domain found in 3E1X: [Tryp_SPc ] by SMART
  • Other resources with information on 3E1X
  • Community annotation for 3E1X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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