3E2U	Protein Binding	date	Aug 06, 2008
title	Crystal Structure Of The Zink-Knuckle 2 Domain Of Human Clip Complex With Cap-Gly Domain Of Human Dynactin-1 (P150-Glued
authors	A.Weisbrich, S.Honnappa, G.Capitani, M.O.Steinmetz
compound		source
Molecule: Dynactin Subunit 1 Chain: A, B, C, D Fragment: Cap-Gly Domain Synonym: 150 Kda Dynein-Associated Polypeptide, Dap-150, Dp P150-Glued, P135; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dctn1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Cap-Gly Domain-Containing Linker Protein 1 Chain: E, F, G, H Fragment: Zn-Knuckle 2 Synonym: Restin, Cytoplasmic Linker Protein 170 Alpha-2, Cl Reed-Sternberg Intermediate Filament-Associated Protein, Cy Linker Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Clip1, Cyln1, Rsn Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petg20 Mta
symmetry	Space Group: C 2 2 21	R_factor 0.191 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.220 116.310 79.880 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	ZN	enzyme
note	3E2U supersedes 2PZO
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G
Primary reference	Structure-function relationship of CAP-Gly domains., Weisbrich A, Honnappa S, Jaussi R, Okhrimenko O, Frey D, Jelesarov I, Akhmanova A, Steinmetz MO, Nat Struct Mol Biol. 2007 Oct;14(10):959-67. Epub 2007 Sep 9. PMID:17828277

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (3e2u.pdb1.gz) 33 Kb Biological Unit Coordinates (3e2u.pdb2.gz) 33 Kb Biological Unit Coordinates (3e2u.pdb3.gz) 34 Kb Biological Unit Coordinates (3e2u.pdb4.gz) 34 Kb Biological Unit Coordinates (3e2u.pdb5.gz) 127 Kb LPC: Ligand-Protein Contacts for 3E2U CSU: Contacts of Structural Units for 3E2U Likely Quarternary Molecular Structure file(s) for 3E2U Structure Factors (142 Kb) Retrieve 3E2U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3E2U from S2C, [Save to disk] Re-refined 3e2u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3E2U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3E2U

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3E2U, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3e2u_B] [3e2u_E] [3e2u_H] [3e2u] [3e2u_F] [3e2u_A] [3e2u_C] [3e2u_G] [3e2u_D] SWISS-PROT database: [P30622] [Q14203] Domain organization of [CLIP1_HUMAN] [DCTN1_HUMAN] by SWISSPFAM Domains found in 3E2U: [CAP_GLY] [ZnF_C2HC ] by SMART

Other resources with information on 3E2U

Community annotation for 3E2U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---