3E61 Structural Genomics, Unknown Function date Aug 14, 2008
title Crystal Structure Of A Putative Transcriptional Repressor Of Operon From Staphylococcus Saprophyticus Subsp. Saprophytic
authors J.B.Bonanno, J.Freeman, K.T.Bain, S.Chang, R.Romero, D.Smith, S.Wa J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Putative Transcriptional Repressor Of Ribose Oper
Chain: A, B
Engineered: Yes
Organism_scientific: Staphylococcus Saprophyticus Subsp. Saprophyticus;
Organism_taxid: 342451
Strain: Atcc 15305
Gene: Ssp1396
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.259
length a length b length c angle alpha angle beta angle gamma
81.146 106.634 68.183 90.00 112.17 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3e61.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (3e61.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3E61
  • CSU: Contacts of Structural Units for 3E61
  • Likely Quarternary Molecular Structure file(s) for 3E61
  • Structure Factors (1712 Kb)
  • Retrieve 3E61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E61 from S2C, [Save to disk]
  • Re-refined 3e61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E61
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E61, from MSDmotif at EBI
  • Fold representative 3e61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e61_B] [3e61] [3e61_A]
  • SWISS-PROT database: [Q49XF6]
  • Domain organization of [Q49XF6_STAS1] by SWISSPFAM
  • Other resources with information on 3E61
  • Community annotation for 3E61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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