3E6K Hydrolase date Aug 15, 2008
title X-Ray Structure Of Human Arginase I: The Mutant D183a In Complex With Abh
authors L.Di Costanzo, D.W.Christianson
compound source
Molecule: Arginase-1
Chain: A, B
Synonym: Type I Arginase, Liver-Type Arginase
Ec: 3.5.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet11d
symmetry Space Group: P 3
R_factor 0.164 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.766 90.766 69.501 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand ABH, MN enzyme Hydrolase E.C.3.5.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceProbing the specificity determinants of amino acid recognition by arginase., Shishova EY, Di Costanzo L, Emig FA, Ash DE, Christianson DW, Biochemistry. 2009 Jan 13;48(1):121-31. PMID:19093830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3e6k.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3e6k.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3E6K
  • CSU: Contacts of Structural Units for 3E6K
  • Likely Quarternary Molecular Structure file(s) for 3E6K
  • Structure Factors (279 Kb)
  • Retrieve 3E6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E6K from S2C, [Save to disk]
  • Re-refined 3e6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E6K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E6K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E6K, from MSDmotif at EBI
  • Fold representative 3e6k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e6k_B] [3e6k] [3e6k_A] [3e6k_]
  • SWISS-PROT database: [P05089]
  • Domain organization of [ARGI1_HUMAN] by SWISSPFAM
  • Other resources with information on 3E6K
  • Community annotation for 3E6K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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