3E7C Transcription date Aug 18, 2008
title Glucocorticoid Receptor Lbd Bound To Gsk866
authors K.P.Madauss, S.P.Williams, I.Mclay, E.L.Stewart, R.K.Bledsoe
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Unp Residues 521-777
Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Coactivator 2
Chain: H, D
Fragment: Unp Residues 741-751
Synonym: Ncoa-2, Transcriptional Intermediary Factor 2
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61
R_factor 0.210 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.654 126.654 78.991 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.15 Å
ligand 866, GOL enzyme
Primary referenceThe first X-ray crystal structure of the glucocorticoid receptor bound to a non-steroidal agonist., Madauss KP, Bledsoe RK, Mclay I, Stewart EL, Uings IJ, Weingarten G, Williams SP, Bioorg Med Chem Lett. 2008 Dec 1;18(23):6097-9. Epub 2008 Oct 8. PMID:18952422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3e7c.pdb1.gz) 178 Kb
  • Biological Unit Coordinates (3e7c.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (3e7c.pdb3.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 3E7C
  • CSU: Contacts of Structural Units for 3E7C
  • Likely Quarternary Molecular Structure file(s) for 3E7C
  • Structure Factors (520 Kb)
  • Retrieve 3E7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E7C from S2C, [Save to disk]
  • Re-refined 3e7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E7C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E7C, from MSDmotif at EBI
  • Fold representative 3e7c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e7c_D] [3e7c] [3e7c_H] [3e7c_B] [3e7c_A]
  • SWISS-PROT database: [P04150] [Q15596]
  • Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM
  • Domain found in 3E7C: [HOLI ] by SMART
  • Other resources with information on 3E7C
  • Community annotation for 3E7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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