4R8Q Structure and substrate recruitment of the human spindle checkpoint kinase bub1 date
authors Tomchick, D.R., Yu, H.
compound source
symmetry
R_factor
R_Free 0.2641
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.31
ligand ADP, MG enzyme
note 4R8Q supersedes 3E7E
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and substrate recruitment of the human spindle checkpoint kinase Bub1., Kang J, Yang M, Li B, Qi W, Zhang C, Shokat KM, Tomchick DR, Machius M, Yu H, Mol Cell. 2008 Nov 7;32(3):394-405. PMID:18995837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4r8q.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 4R8Q
  • CSU: Contacts of Structural Units for 4R8Q
  • Structure Factors (292 Kb)
  • Retrieve 4R8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R8Q from S2C, [Save to disk]
  • Re-refined 4r8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R8Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R8Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r8q_A] [4r8q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R8Q: [STYKc ] by SMART
    • Other resources with information on 4R8Q
  • Community annotation for 4R8Q at PDBWiki (http://pdbwiki.org)

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