3E7O Transferase date Aug 18, 2008
title Crystal Structure Of Jnk2
authors A.Kuglstatter, A.G.Villasenor
compound source
Molecule: Mitogen-Activated Protein Kinase 9
Chain: A, B
Fragment: Residues 7-362
Synonym: Stress-Activated Protein Kinase Jnk2, C-Jun N-Term Kinase 2, Jnk-55;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk9, Jnk2, Prkm9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.688 78.784 78.927 90.00 96.43 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand 35F enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of JNK2 reveals conformational flexibility in the MAP kinase insert and indicates its involvement in the regulation of catalytic activity., Shaw D, Wang SM, Villasenor AG, Tsing S, Walter D, Browner MF, Barnett J, Kuglstatter A, J Mol Biol. 2008 Nov 21;383(4):885-93. Epub 2008 Sep 10. PMID:18801372
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3e7o.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3e7o.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (3e7o.pdb3.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3E7O
  • CSU: Contacts of Structural Units for 3E7O
  • Likely Quarternary Molecular Structure file(s) for 3E7O
  • Structure Factors (394 Kb)
  • Retrieve 3E7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E7O from S2C, [Save to disk]
  • Re-refined 3e7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E7O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E7O, from MSDmotif at EBI
  • Fold representative 3e7o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e7o] [3e7o_A] [3e7o_B]
  • SWISS-PROT database: [P45984]
  • Domain organization of [MK09_HUMAN] by SWISSPFAM
  • Domain found in 3E7O: [S_TKc ] by SMART
  • Other resources with information on 3E7O
  • Community annotation for 3E7O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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