3E8D Transferase date Aug 19, 2008
title Crystal Structures Of The Kinase Domain Of Akt2 In Complex W Competitive Inhibitors
authors N.O.Concha, P.A.Elkins, A.Smallwood, P.Ward
compound source
Molecule: Rac-Beta Serinethreonine-Protein Kinase
Chain: A, B
Fragment: Akt2 Kinase Domain (Unp Residues 146-480)
Synonym: Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase Pkb Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Glycogen Synthase Kinase-3 Beta Peptide
Chain: C, D
Synonym: Gsk-3 Beta
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. It I Naturally In Human.
symmetry Space Group: P 32
R_factor 0.211 R_Free 0.268
length a length b length c angle alpha angle beta angle gamma
116.823 116.823 45.102 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand G98, TPO BindingDB enzyme Transferase E.C. BRENDA
A, B

Primary referenceAminofurazans as potent inhibitors of AKT kinase., Rouse MB, Seefeld MA, Leber JD, McNulty KC, Sun L, Miller WH, Zhang S, Minthorn EA, Concha NO, Choudhry AE, Schaber MD, Heerding DA, Bioorg Med Chem Lett. 2009 Mar 1;19(5):1508-11. Epub 2009 Jan 9. PMID:19179070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3e8d.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3e8d.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3E8D
  • CSU: Contacts of Structural Units for 3E8D
  • Likely Quarternary Molecular Structure file(s) for 3E8D
  • Structure Factors (508 Kb)
  • Retrieve 3E8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E8D from S2C, [Save to disk]
  • Re-refined 3e8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E8D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E8D, from MSDmotif at EBI
  • Fold representative 3e8d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e8d_D] [3e8d_B] [3e8d_A] [3e8d] [3e8d_C]
  • SWISS-PROT database: [P31751] [P49841]
  • Domain organization of [AKT2_HUMAN] [GSK3B_HUMAN] by SWISSPFAM
  • Domains found in 3E8D: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3E8D
  • Community annotation for 3E8D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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