3E8E	Transferase	date	Aug 19, 2008
title	Crystal Structures Of The Kinase Domain Of Pka In Complex Wi Competitive Inhibitors
authors	N.O.Concha, P.A.Elkins, A.Smallwood, P.Ward
compound		source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A Chain: A, B, E, I, L, P Fragment: Camp-Dependent Pka Kinase Domain Synonym: Pka C-Alpha Ec: 2.7.11.11 Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Cow Organism_taxid: 9913 Gene: Pka, Prkaca Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Ai) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest14
Molecule: Pki Inhibitor Peptide Chain: G, C, F, J, N, Q Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. It I Naturally In Bovine.
symmetry	Space Group: P 1 21 1	R_factor 0.243 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.578 95.848 179.097 90.00 102.53 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	G98, SEP, TPO	enzyme	Transferase E.C.2.7.11.11 BRENDA
Gene Ontology	Chain Function Process Component A, P, E, B, I, L F, J, N, Q, C, G
Primary reference	Aminofurazans as potent inhibitors of AKT kinase., Rouse MB, Seefeld MA, Leber JD, McNulty KC, Sun L, Miller WH, Zhang S, Minthorn EA, Concha NO, Choudhry AE, Schaber MD, Heerding DA, Bioorg Med Chem Lett. 2009 Mar 1;19(5):1508-11. Epub 2009 Jan 9. PMID:19179070

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk] Biological Unit Coordinates (3e8e.pdb1.gz) 66 Kb Biological Unit Coordinates (3e8e.pdb2.gz) 65 Kb Biological Unit Coordinates (3e8e.pdb3.gz) 66 Kb Biological Unit Coordinates (3e8e.pdb4.gz) 65 Kb Biological Unit Coordinates (3e8e.pdb5.gz) 65 Kb Biological Unit Coordinates (3e8e.pdb6.gz) 65 Kb LPC: Ligand-Protein Contacts for 3E8E CSU: Contacts of Structural Units for 3E8E Likely Quarternary Molecular Structure file(s) for 3E8E Structure Factors (4001 Kb) Retrieve 3E8E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3E8E from S2C, [Save to disk] Re-refined 3e8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3E8E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3E8E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3E8E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3e8e_J] [3e8e_G] [3e8e_L] [3e8e_P] [3e8e_C] [3e8e_F] [3e8e_N] [3e8e_I] [3e8e_A] [3e8e] [3e8e_Q] [3e8e_B] [3e8e_E] SWISS-PROT database: [Q3SX13] [P00517] Domain organization of [IPKA_BOVIN] [KAPCA_BOVIN] by SWISSPFAM Domains found in 3E8E: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 3E8E

Community annotation for 3E8E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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