3E8R	Hydrolase	date	Aug 20, 2008
title	Crystal Structure Of Catalytic Domain Of Tace With Hydroxama Inhibitor
authors	P.Orth
compound		source
Molecule: Adam 17 Chain: A, B Fragment: Catalytic Domain, Unp Residues 215-477 Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like P Ec: 3.4.24.86 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adam17, Csvp, Tace Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.722 75.761 102.985 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	615, CIT, INN, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24.86 BRENDA
Primary reference	Discovery of novel hydroxamates as highly potent tumor necrosis factor-alpha converting enzyme inhibitors. Part II: Optimization of the S3' pocket., Mazzola RD Jr, Zhu Z, Sinning L, McKittrick B, Lavey B, Spitler J, Kozlowski J, Neng-Yang S, Zhou G, Guo Z, Orth P, Madison V, Sun J, Lundell D, Niu X, Bioorg Med Chem Lett. 2008 Sep 13. PMID:18835710

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (3e8r.pdb1.gz) 48 Kb Biological Unit Coordinates (3e8r.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 3E8R CSU: Contacts of Structural Units for 3E8R Likely Quarternary Molecular Structure file(s) for 3E8R Structure Factors (727 Kb) Retrieve 3E8R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3E8R from S2C, [Save to disk] Re-refined 3e8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3E8R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3E8R

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3E8R, from MSDmotif at EBI Fold representative 3e8r from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3e8r_A] [3e8r_B] SWISS-PROT database: [P78536] Domain organization of [ADA17_HUMAN] by SWISSPFAM Alignments of the sequence of 3E8R with the sequences similar proteins can be viewed for 3E8R's classification [ADA17_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ADA17_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3E8R

Community annotation for 3E8R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---