3E8R Hydrolase date Aug 20, 2008
title Crystal Structure Of Catalytic Domain Of Tace With Hydroxama Inhibitor
authors P.Orth
compound source
Molecule: Adam 17
Chain: A, B
Fragment: Catalytic Domain, Unp Residues 215-477
Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like P
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
74.722 75.761 102.985 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 615, CIT, INN, ZN BindingDB enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceDiscovery of novel hydroxamates as highly potent tumor necrosis factor-alpha converting enzyme inhibitors. Part II: Optimization of the S3' pocket., Mazzola RD Jr, Zhu Z, Sinning L, McKittrick B, Lavey B, Spitler J, Kozlowski J, Neng-Yang S, Zhou G, Guo Z, Orth P, Madison V, Sun J, Lundell D, Niu X, Bioorg Med Chem Lett. 2008 Sep 13. PMID:18835710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3e8r.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3e8r.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3E8R
  • CSU: Contacts of Structural Units for 3E8R
  • Likely Quarternary Molecular Structure file(s) for 3E8R
  • Structure Factors (728 Kb)
  • Retrieve 3E8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E8R from S2C, [Save to disk]
  • Re-refined 3e8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E8R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3E8R, from MSDmotif at EBI
  • Fold representative 3e8r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e8r_A] [3e8r] [3e8r_B]
  • SWISS-PROT database: [P78536]
  • Belongs to the sheddase (sheddase) family according to TCDB.
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 3E8R
  • Community annotation for 3E8R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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