3E9M Oxidoreductase date Aug 22, 2008
title Crystal Structure Of An Oxidoreductase From Enterococcus Fae
authors L.Damodharan, S.K.Burley, S.Swaminathan, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Oxidoreductase, Gfoidhmoca Family
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Enterococcus Faecalis
Organism_common: Streptococcus Faecalis
Organism_taxid: 1351
Gene: Ef_0827
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.233 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.918 146.925 80.531 90.00 100.84 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MSE enzyme
Gene EF
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • oxidoreductase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (3e9m.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (3e9m.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3E9M
  • CSU: Contacts of Structural Units for 3E9M
  • Likely Quarternary Molecular Structure file(s) for 3E9M
  • Structure Factors (293 Kb)
  • Retrieve 3E9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E9M from S2C, [Save to disk]
  • Re-refined 3e9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3E9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3E9M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E9M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e9m_B] [3e9m_A] [3e9m_C] [3e9m_D] [3e9m]
  • SWISS-PROT database: [Q837L0]
  • Domain organization of [Q837L0_ENTFA] by SWISSPFAM
    • Other resources with information on 3E9M
  • Community annotation for 3E9M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science