3EAY	Hydrolase	date	Aug 26, 2008
title	Crystal Structure Of The Human Senp7 Catalytic Domain
authors	C.D.Lima, D.Reverter
compound		source
Molecule: Sentrin-Specific Protease 7 Chain: A Fragment: Catalytic Domain: Residues 662-984 Synonym: Sentrinsumo-Specific Protease Senp7 Ec: 3.4.22.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Senp7, Kiaa1707, Ssp2, Susp2 Expression_system: Escherichia Coli Expression_system_strain: Bl21(De3)Cp(Ril) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 32 2 1	R_factor 0.202 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.220 76.220 103.460 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	SO4	enzyme	Hydrolase E.C.3.4.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7., Lima CD, Reverter D, J Biol Chem. 2008 Nov 14;283(46):32045-55. Epub 2008 Sep 16. PMID:18799455

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3eay.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 3EAY CSU: Contacts of Structural Units for 3EAY Likely Quarternary Molecular Structure file(s) for 3EAY Structure Factors (120 Kb) Retrieve 3EAY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EAY from S2C, [Save to disk] Re-refined 3eay structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EAY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EAY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EAY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eay_A] [3eay] SWISS-PROT database: [Q9BQF6] Domain organization of [SENP7_HUMAN] by SWISSPFAM

Other resources with information on 3EAY

Community annotation for 3EAY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---