3EAZ Transferase date Aug 26, 2008
title Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-Termi Kinase), C122s Mutant.
authors D.Liu, R.D.Seidel, D.Cowburn
compound source
Molecule: Tyrosine-Protein Kinase Csk
Chain: A
Fragment: Csk, Sh2 Domain (Unp Residues 73 To 178)
Synonym: C-Src Kinase, Protein-Tyrosine Kinase Cyl
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21(De3)
Gene: Csk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptwin1
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.506 48.148 49.928 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.31 Å
ligand
enzyme Transferase E.C.2.7.10.2 BRENDA
Primary referenceCombining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase., Liu D, Cowburn D, Biophys Rep. 2016;2(1):33-43. Epub 2016 Jul 1. PMID:27819029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3eaz.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 3EAZ
  • Structure Factors (310 Kb)
  • Retrieve 3EAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EAZ from S2C, [Save to disk]
  • Re-refined 3eaz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EAZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EAZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eaz] [3eaz_A]
  • SWISS-PROT database: [P41240]
  • Domain organization of [CSK_HUMAN] by SWISSPFAM
  • Domain found in 3EAZ: [SH2 ] by SMART
  • Other resources with information on 3EAZ
  • Community annotation for 3EAZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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