3EBM	Calcium-Binding Protein	date	Aug 28, 2008
title	Crystal Structure Of Human Translationally Controlled Tumour Associated Protein (Htctp) Mutant E12v
authors	B.Yang, X.Dong, C.Zhong, J.Ding
compound		source
Molecule: Translationally-Controlled Tumor Protein Chain: A, B, C, D Synonym: Translationally Controlled Tumour Associated Prote Tctp, P23, Histamine-Releasing Factor, Hrf, Fortilin; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Man Organism_taxid: 9606 Gene: Tpt1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22b+
symmetry	Space Group: P 21 21 21	R_factor 0.237 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.192 81.543 139.920 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
Gene Ontology	Chain Function Process Component A, D, C, B calcium ion binding
Primary reference	Molecular basis of the acceleration of the GDP-GTP exchange of human ras homolog enriched in brain by human translationally controlled tumor protein., Dong X, Yang B, Li Y, Zhong C, Ding J, J Biol Chem. 2009 Aug 28;284(35):23754-64. Epub 2009 Jul 1. PMID:19570981

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk] Biological Unit Coordinates (3ebm.pdb1.gz) 48 Kb Biological Unit Coordinates (3ebm.pdb2.gz) 48 Kb Biological Unit Coordinates (3ebm.pdb3.gz) 47 Kb Biological Unit Coordinates (3ebm.pdb4.gz) 48 Kb CSU: Contacts of Structural Units for 3EBM Likely Quarternary Molecular Structure file(s) for 3EBM Structure Factors (157 Kb) Retrieve 3EBM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EBM from S2C, [Save to disk] Re-refined 3ebm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EBM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EBM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EBM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ebm_D] [3ebm] [3ebm_B] [3ebm_A] [3ebm_C] SWISS-PROT database: [P13693] Domain organization of [TCTP_HUMAN] by SWISSPFAM

Other resources with information on 3EBM

Community annotation for 3EBM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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