3EC8 Cell Adhesion date Aug 29, 2008
title The Crystal Structure Of The Ra Domain Of Flj10324 (Radil)
authors M.Wisniewska, L.Lehtio, J.Andersson, C.H.Arrowsmith, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, M.Moche, M.E. P.Nordlund, T.Nyman, K.Olesen, C.Persson, J.Sagemark, H.Schueler A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weigelt, M.Welin, M.Wikstrom, H.Berglund, Structural Genomics Consortium (Sgc)
compound source
Molecule: Putative Uncharacterized Protein Flj10324
Chain: A
Fragment: Ra Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 31 1 2
R_factor 0.227 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.080 46.080 135.610 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CL, GOL, PB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3ec8.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3ec8.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3EC8
  • CSU: Contacts of Structural Units for 3EC8
  • Likely Quarternary Molecular Structure file(s) for 3EC8
  • Structure Factors (75 Kb)
  • Retrieve 3EC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EC8 from S2C, [Save to disk]
  • Re-refined 3ec8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EC8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EC8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ec8] [3ec8_A]
  • SWISS-PROT database: [Q96JH8]
  • Domain organization of [RADIL_HUMAN] by SWISSPFAM
  • Domain found in 3EC8: [RA ] by SMART
    • Other resources with information on 3EC8
  • Community annotation for 3EC8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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