3ECI Apoptosis date Aug 30, 2008
title Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3)
authors J.R.Walker, T.L.Davis, S.Mujib, C.Butler-Cole, W.Tempel, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, A.Botchkarev S.Dhe-Paganon
compound source
Molecule: Microtubule-Associated Protein 1 Light Chain 3 Alpha;
Chain: A, B
Synonym: Microtubule-Associated Proteins 1a1b Light Chain 3a, Map1amap1b Lc3 A, Map1a1b Light Chain 3 A, Map1 Light Chain 3- Like Protein 1, Autophagy-Related Protein Lc3 A, Autophagy-Related Ubiquitin-Like Modifier Lc3 A;
Engineered: Yes
Other_details: Isoform A (Mapalc3)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map1lc3a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 42
R_factor 0.233 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.066 80.066 37.089 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3eci.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (3eci.pdb2.gz) 36 Kb
  • CSU: Contacts of Structural Units for 3ECI
  • Likely Quarternary Molecular Structure file(s) for 3ECI
  • Structure Factors (107 Kb)
  • Retrieve 3ECI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ECI from S2C, [Save to disk]
  • Re-refined 3eci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ECI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ECI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ECI, from MSDmotif at EBI
  • Fold representative 3eci from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eci_A] [3eci_B] [3eci]
  • SWISS-PROT database: [Q9H492]
  • Domain organization of [MLP3A_HUMAN] by SWISSPFAM
  • Other resources with information on 3ECI
  • Community annotation for 3ECI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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