3EDI Hydrolase date Sep 03, 2008
title Crystal Structure Of Tolloid-Like Protease 1 (Tll-1) Protease Domain
authors A.Mac Sweeney
compound source
Molecule: Tolloid-Like Protein 1
Chain: A
Fragment: Protease Domain
Synonym: Tll-1
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tll1, Tll
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a
symmetry Space Group: P 1 21 1
R_factor 0.154 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.281 58.923 47.444 90.00 104.62 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand ACE, DMS, SO4, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3edi.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3EDI
  • CSU: Contacts of Structural Units for 3EDI
  • Likely Quarternary Molecular Structure file(s) for 3EDI
  • Structure Factors (613 Kb)
  • Retrieve 3EDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EDI from S2C, [Save to disk]
  • Re-refined 3edi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EDI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EDI, from MSDmotif at EBI
  • Fold representative 3edi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3edi_A] [3edi]
  • SWISS-PROT database: [O43897]
  • Domain organization of [TLL1_HUMAN] by SWISSPFAM
  • Domain found in 3EDI: [ZnMc ] by SMART
  • Other resources with information on 3EDI
  • Community annotation for 3EDI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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